PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70373.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MIKC_MADS
Protein Properties Length: 142aa    MW: 16084.4 Da    PI: 9.538
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70373.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.7e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie++s r+vtfskRr gilKKA+ELSvLCdaeva iifs +g+lye+ss
  EPS70373.1  9 KRIEDSSSRHVTFSKRRSGILKKAFELSVLCDAEVAAIIFSAKGRLYEFSS 59
                79***********************************************96 PP

2K-box39.72e-1483142869
       K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 + +++a++   ++el+k  ++++ L+ +   llGe+L+++s++eL++Le+qL +s++k+RskK
  EPS70373.1  83 KkNAAAEQTDPETELRKTLERVDDLRGK---LLGEKLDECSIEELEKLENQLATSISKVRSKK 142
                 2366677777889999999999999997...*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.28E-35371No hitNo description
SuperFamilySSF554558.5E-30373IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.96587142IPR002487Transcription factor, K-box
PfamPF014861.6E-1095142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVRGKIQIKR IEDSSSRHVT FSKRRSGILK KAFELSVLCD AEVAAIIFSA KGRLYEFSSS  60
SSIDETINRY MMNDINASQT IKKKNAAAEQ TDPETELRKT LERVDDLRGK LLGEKLDECS  120
IEELEKLENQ LATSISKVRS KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-19170169Myocyte-specific enhancer factor 2B
1tqe_Q7e-19170169Myocyte-specific enhancer factor 2B
1tqe_R7e-19170169Myocyte-specific enhancer factor 2B
1tqe_S7e-19170169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081162.11e-49PREDICTED: MADS-box protein SOC1
SwissprotQ388381e-46AGL14_ARATH; Agamous-like MADS-box protein AGL14
TrEMBLS8E3W71e-98S8E3W7_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA17G14191.14e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.16e-48AGAMOUS-like 14
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]